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mGene and mTim at the RGASP2 challenge

The mGene, mGene graph and mTim submissions to RGASP2 where based on a combination of the following tools:

  • Palmapper for RNA-seq read mapping
  • mGene for full genome annotation based on genomic and RNA-seq features
  • mTim for genome segmentation into exonic, intronic and intergenic regions
  • SplAdder for generation of alternative transcript isoforms
  • rQuant for quantification of transcript isoforms
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