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Home Rätsch Lab Talks & Lectures Lecture on Advanced Methods in Sequence Analysis Lecture 3: Introduction to Kernels

Lecture 3: Introduction to Kernels

The slides can be downloaded here.

The python scripts to reproduce the experiments in the lecture:

In order to get the python scripts to run you need to install the SHOGUN software package. Please use the new alpha version and let us know when you have any problems. Hints: use "./configure --enable-python --enable-swig --python=2.4 --prefix=~/shogun_package" with swig version >= 1.3.24, scipy-core and matplotlib installed.

Additionally there are a few matlab scripts that were used to generate the splice site recognition results on the slides:

In order to get the matlab to run you need to install the SHOGUN software package. Hints: use "./configure --enable-matlab" with matlab version >=7).

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